Status
The Labyrinthula sp. SR_Ha_C genome sequence and gene models have not been determined by the JGI, but were provided by Stacey Trevathan-Tackett at Deakin University. Please note that this copy of the genome is not maintained by Trevathan-Tackett and Tan and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Genome Assembly | |
Genome Assembly size (Mbp) | 50.95 |
Sequencing read coverage depth | |
# of contigs | 159 |
# of scaffolds | 159 |
# of scaffolds >= 2Kbp | 159 |
Scaffold N50 | 14 |
Scaffold L50 (Mbp) | 1.27 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 3.30, 2.82, 2.26 |
Gene Models | DU_gene_models | |
length (bp) of: | average | median |
gene | 1603 | 1301 |
transcript | 1512 | 1245 |
exon | 745 | 458 |
intron | 90 | 32 |
description: | ||
protein length (aa) | 471 | 371 |
exons per gene | 2.03 | 2 |
# of gene models | 8488 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Tan MH, Loke S, Croft LJ, Gleason FH, Lange L, Pilgaard B, Trevathan-Tackett SM
First Genome of Labyrinthula sp., an Opportunistic Seagrass Pathogen, Reveals Novel Insight into Marine Protist Phylogeny, Ecology and CAZyme Cell-Wall Degradation.
Microb Ecol. 2021 Aug;82(2):498-511. doi: 10.1007/s00248-020-01647-x
Tan MH, Loke S, Croft LJ, Gleason FH, Lange L, Pilgaard B, Trevathan-Tackett SM
First Genome of Labyrinthula sp., an Opportunistic Seagrass Pathogen, Reveals Novel Insight into Marine Protist Phylogeny, Ecology and CAZyme Cell-Wall Degradation.
Microb Ecol. 2021 Aug;82(2):498-511. doi: 10.1007/s00248-020-01647-x
Links
- JGI PhyloGroup Portals: Heterokonta Labyrinthulomycota
- JGI EcoGroup Portals: Plant pathogens
Funding
This project was not sequenced at the JGI.