Status
[December 2024] The Didymosphaeriaceae sp. SO21a v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 38.92 |
| Sequencing read coverage depth | 96.59x |
| # of contigs | 19 |
| # of scaffolds | 19 |
| # of scaffolds >= 2Kbp | 19 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 2.27 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 5.21, 3.30, 3.14 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1666 | 1357 |
| transcript | 1490 | 1221 |
| exon | 506 | 295 |
| intron | 93 | 57 |
| description: | ||
| protein length (aa) | 497 | 407 |
| exons per gene | 2.94 | 2 |
| # of gene models | 13075 |
Collaborators
- Amy Honan, Oregon State University, Corvallis, OR
- Samuel Ogle, Oregon State University, Corvallis, OR
Links
- JGI Myco-Ed homepage
- JGI Myco-Ed Genome Group Portal
- JGI Ecogroup Portal: Endophytic_fungi
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Pleosporales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
