Info • Bretziella fagacearum C519 v1.0

Status

[August 2020] The Bretziella fagacearum C519 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Bretziella fagacearum C519 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.07
Sequencing read coverage depth 1464.36x
# of contigs 9
# of scaffolds 9
# of scaffolds >= 2Kbp 9
Scaffold N50 3
Scaffold L50 (Mbp) 4.39
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.03, 4.56, 4.39


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 61202 36672 59.9%
Ests est.fasta 123449077 118654507 96.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1928 1670
transcript 1722 1482
exon 674 410
intron 135 81
description:
protein length (aa) 486 400
exons per gene 2.56 2
# of gene models 7554


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Chahal Karandeep, Mahey Mohit, Medina-Mora Carmen, Ahrendt Steven, Riley Robert, Lipzen Anna, Yan Juying, Savage Emily, Koriabine Maxim, Ng Vivian, Grigoriev Igor V., Harrington Thomas C., Patterson Eric L., Miles Timothy D., Sakalidis Monique L.
A High-Quality Genome Resource for the Oak Wilt Pathogen <i>Bretziella fagacearum</i>
PhytoFrontiers™. 2025;: doi: 10.1094/PHYTOFR-07-24-0080-A

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.